6.1 Class: C2H2 zinc finger factors (C2H2), Alignment
Note: The four families of this class do not share significant sequence similarities. Therefore, the sequence aligments of their DNA-binding domains will be listed separately for the three-zinc finger Krüppel-related factors (2.3.1), the other factors with up to three adjacent zinc fingers (2.3.2), factors with more than 3 adjacent zinc fingers (2.3.3), the factors with multiple dispersed zinc fingers (2.3.4), and the BED zinc finger factors (2.3.5).
Aligned Krüppel-related C2H2 sequences (Family 2.3.1):
Alignment of the whole DNA-binding domains, each comprising three repeats:
HICHIQGCGKVYGKTSHLRAHLRWHTGERPFMCTWSYCGKRFTRSDELQRHKRTHTGEKKFACPECPKRFMRSDHLSKHIKTH	Sp1
HVCHIPDCGKTFRKTSLLRAHVRLHTGERPFVCNWFFCGKRFTRSDELQRHARTHTGDKRFECAQCQKRFMRSDHLTKHYKTH	Sp2
HICHIPGCGKVYGKTSHLRAHLRWHSGERPFVCNWMYCGKRFTRSDELQRHRRTHTGEKKFVCPECSKRFMRSDHLAKHIKTH	Sp3
HICHIEGCGKVYGKTSHLRAHLRWHTGERPFICNWMFCGKRFTRSDELQRHRRTHTGEKRFECPECSKRFMRSDHLSKHVKTH	Sp4
HVCHVPGCGKVYGKTSHLKAHLRWHTGERPFVCNWLFCGKSFTRSDELQRHLRTHTGEKRFACPECGKRFMRSDHLAKHVKTH	Sp5
HNCHIPGCGKAYAKTSHLKAHLRWHSGDRPFVCNWLFCGKRFTRSDELQRHLQTHTGTKKFPCAVCSRVFMRSDHLAKHMKTH	Sp6
HSCHIPGCGKVYGKASHLKAHLRWHTGERPFVCNWLFCGKRFTRSDELERHVRTHTREKKFTCLLCSKRFTRSDHLSKHQRTH	Sp7
HSCHIPGCGKVYGKTSHLKAHLRWHTGERPFVCNWLFCGKRFTRSDELQRHLRTHTGEKRFACPVCNKRFMRSDHLSKHVKTH	Sp8
HSCHIPGCGKVYGKTSHLKAHLRWHTGERPFVCNWLFCGKRFTRSDELQRHLRTHTGEKRFACPVCNKRFMRSDHLSKHIKTH	Sp9
HTCAHPGCGKSYTKSSHLKAHLRTHTGEKPYACTWEGCGWRFARSDELTRHYRKHTGQRPFRCQLCPRAFSRSDHLALHMKRH	KLF1
HTCSYAGCGKTYTKSSHLKAHLRTHTGEKPYHCNWDGCGWKFARSDELTRHYRKHTGHRPFQCHLCDRAFSRSDHLALHMKRH	KLF2
HRCDYDGCNKVYTKSSHLKAHRRTHTGEKPYKCTWEGCTWKFARSDELTRHFRKHTGIKPFQCPDCDRSFSRSDHLALHRKRH	KLF3
HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH	KLF4
HYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH	KLF5
HRCHFNGCRKVYTKSSHLKAHQRTHTGEKPYRCSWEGCEWRFARSDELTRHFRKHTGAKPFKCSHCDRCFSRSDHLALHMKRH	KLF6
HRCQFNGCRKVYTKSSHLKAHQRTHTGEKPYKCSWEGCEWRFARSDELTRHYRKHTGAKPFKCNHCDRCFSRSDHLALHMKRH	KLF7
HQCDFAGCSKVYTKSSHLKAHRRIHTGEKPYKCTWDGCSWKFARSDELTRHFRKHTGIKPFRCTDCNRSFSRSDHLSLHRRRH	KLF8
HKCPYSGCGKVYGKSSHLKAHYRVHTGERPFPCTWPDCLKKFSRSDELTRHYRTHTGEKQFRCPLCEKRFMRSDHLTKHARRH	KLF9
HICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTHTGEKKFACPMCDRRFMRSDHLTKHARRH	KLF10
YVCSFPGCRKTYFKSSHLKAHLRTHTGEKPFNCSWDGCDKKFARSDELSRHRRTHTGEKKFVCPVCDRRFMRSDHLTKHARRH	KLF11
HRCDFEGCNKVYTKSSHLKAHRRTHTGEKPYKCTWEGCTWKFARSDELTRHYRKHTGVKPFKCADCDRSFSRSDHLALHRRRH	KLF12
HKCHYAGCEKVYGKSSHLKAHLRTHTGERPFACSWQDCNKKFARSDELARHYRTHTGEKKFSCPICEKRFMRSDHLTKHARRH	KLF13
HQCPFPGCTKAYYKSSHLKSHQRTHTGERPFSCDWLDCDKKFTRSDELARHYRTHTGEKRFSCPLCPKQFSRSDHLTKHARRH	KLF14
HKCTFPGCSKMYTKSSHLKAHLRRHTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPYQCPVCEKKFARSDHLSKHIKVH	KLF15
HRCPFPDCAKAYYKSSHLKSHLRTHTGERPFACDWQGCDKKFARSDELARHHRTHTGEKRFSCPLCSKRFTRSDHLAKHARRH	KLF16
YCCNYENCGKAYTKRSHLVSHQRKHTGERPYSCNWESCSWSFFRSDELRRHMRVHTRYRPYKCDQCSREFMRSDHLKQHQKTH	KLF17
YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH	EGR1
YPCPAEGCDRRFSRSDELTRHIRIHTGHKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDYCGRKFARSDERKRHTKIH	EGR2
HACPAEGCDRRFSRSDELTRHLRIHTGHKPFQCRI--CMRSFSRSDHLTTHIRTHTGEKPFACEFCGRKFARSDERKRHAKIH	EGR3
FACPVESCVRSFARSDELNRHLRIHTGHKPFQCRI--CLRNFSRSDHLTTHVRTHTGEKPFACDVCGRRFARSDEKKRHSKVH	EGR4
Alignment of the zinc finger motifs of each factor, consecutively numbered:
HICHIQGCGKVYGKTSHLRAHLRWH	Sp1(1)
FMCTWSYCGKRFTRSDELQRHKRTH	Sp1(2)
FAC--PECPKRFMRSDHLSKHIKTH	Sp1(3)
HVCHIPDCGKTFRKTSLLRAHVRLH	Sp2(1)
FVCNWFFCGKRFTRSDELQRHARTH	Sp2(2)
FEC--AQCQKRFMRSDHLTKHYKTH	Sp2(3)
HICHIPGCGKVYGKTSHLRAHLRWH	Sp3(1)
FVCNWMYCGKRFTRSDELQRHRRTH	Sp3(2)
FVC--PECSKRFMRSDHLAKHIKTH	Sp3(3)
HICHIEGCGKVYGKTSHLRAHLRWH	Sp4(1)
FICNWMFCGKRFTRSDELQRHRRTH	Sp4(2)
FEC--PECSKRFMRSDHLSKHVKTH	Sp4(3)
HVCHVPGCGKVYGKTSHLKAHLRWH	Sp5(1)
FVCNWLFCGKSFTRSDELQRHLRTH	Sp5(2)
FAC--PECGKRFMRSDHLAKHVKTH	Sp5(3)
HNCHIPGCGKAYAKTSHLKAHLRWH	Sp6(1)
FVCNWLFCGKRFTRSDELQRHLQTH	Sp6(2)
FPC--AVCSRVFMRSDHLAKHMKTH	Sp6(3)
HSCHIPGCGKVYGKASHLKAHLRWH	Sp7(1)
FVCNWLFCGKRFTRSDELERHVRTH	Sp7(2)
FTC--LLCSKRFTRSDHLSKHQRTH	Sp7(3)
HSCHIPGCGKVYGKTSHLKAHLRWH	Sp8(1)
FVCNWLFCGKRFTRSDELQRHLRTH	Sp8(2)
FAC--PVCNKRFMRSDHLSKHVKTH	Sp8(3)
HSCHIPGCGKVYGKTSHLKAHLRWH	Sp9(1)
FVCNWLFCGKRFTRSDELQRHLRTH	Sp9(2)
FAC--PVCNKRFMRSDHLSKHIKTH	Sp9(3)
HTCDYAGCGKTYTKSSHLKAHLRTH	KLF4(1)
YHCDWDGCGWKFARSDELTRHYRKH	KLF4(2)
FQCQK--CDRAFSRSDHLALHMKRH	KLF4(3)
HYCDYPGCTKVYTKSSHLKAHLRTH	KLF5(1)
YKCTWEGCDWRFARSDELTRHYRKH	KLF5(2)
FQCGV--CNRSFSRSDHLALHMKRH	KLF5(3)
HRCHFNGCRKVYTKSSHLKAHQRTH	KLF6(1)
YRCSWEGCEWRFARSDELTRHFRKH	KLF6(2)
FKCSH--CDRCFSRSDHLALHMKRH	KLF6(3)
HRCQFNGCRKVYTKSSHLKAHQRTH	KLF7(1)
YKCSWEGCEWRFARSDELTRHYRKH	KLF7(2)
FKCNH--CDRCFSRSDHLALHMKRH	KLF7(3)
HQCDFAGCSKVYTKSSHLKAHRRIH	KLF8(1)
YKCTWDGCSWKFARSDELTRHFRKH	KLF8(2)
FRCTD--CNRSFSRSDHLSLHRRRH	KLF8(3)
HKCPYSGCGKVYGKSSHLKAHYRVH	KLF9(1)
FPCTWPDCLKKFSRSDELTRHYRTH	KLF9(2)
FRCPL--CEKRFMRSDHLTKHARRH	KLF9(3)
HICSHPGCGKTYFKSSHLKAHTRTH	KLF10(1)
FSCSWKGCERRFARSDELSRHRRTH	KLF10(2)
FACPM--CDRRFMRSDHLTKHARRH	KLF10(3)
YVCSFPGCRKTYFKSSHLKAHLRTH	KLF11(1)
FNCSWDGCDKKFARSDELSRHRRTH	KLF11(2)
FVCPV--CDRRFMRSDHLTKHARRH	KLF11(3)
HRCDFEGCNKVYTKSSHLKAHRRTH	KLF12(1)
YKCTWEGCTWKFARSDELTRHYRKH	KLF12(2)
FKCAD--CDRSFSRSDHLALHRRRH	KLF12(3)
HKCHYAGCEKVYGKSSHLKAHLRTH	KLF13(1)
FACSWQDCNKKFARSDELARHYRTH	KLF13(2)
FSCPI--CEKRFMRSDHLTKHARRH	KLF13(3)
HQCPFPGCTKAYYKSSHLKSHQRTH	KLF14(1)
FSCDWLDCDKKFTRSDELARHYRTH	KLF14(2)
FSCPL--CPKQFSRSDHLTKHARRH	KLF14(3)
HKCTFPGCSKMYTKSSHLKAHLRRH	KLF15(1)
FACTWPGCGWRFSRSDELSRHRRSH	KLF15(2)
YQCPV--CEKKFARSDHLSKHIKVH	KLF15(3)
HRCPFPDCAKAYYKSSHLKSHLRTH	KLF16(1)
FACDWQGCDKKFARSDELARHHRTH	KLF16(2)
FSCPLC--SKRFTRSDHLAKHARRH	KLF16(3)
YCCNYENCGKAYTKRSHLVSHQRKH	KLF17(1)
YSCNWESCSWSFFRSDELRRHMRVH	KLF17(2)
YKCDQ--CSREFMRSDHLKQHQKTH	KLF17(3)
YACPVESCDRRFSRSDELTRHIRIH	EGR1(1)
FQCRI--CMRNFSRSDHLTTHIRTH	EGR1(2)
FACDI--CGRKFARSDERKRHTKIH	EGR1(3)
YPCPAEGCDRRFSRSDELTRHIRIH	EGR2(1)
FQCRI--CMRNFSRSDHLTTHIRTH	EGR2(2)
FACDY--CGRKFARSDERKRHTKIH	EGR2(3)
HACPAEGCDRRFSRSDELTRHLRIH	EGR3(1)
FQCRI--CMRSFSRSDHLTTHIRTH	EGR3(2)
FACEF--CGRKFARSDERKRHAKIH	EGR3(3)
FACPVESCVRSFARSDELNRHLRIH	EGR4(1)
FQCRI--CLRNFSRSDHLTTHVRTH	EGR4(2)
FACDV--CGRRFARSDEKKRHSKVH	EGR4(3)
Aligned other 3 zinc finger sequences (Family 2.3.2):
Alignment of the whole DNA-binding domains, most comprising three repeats (degenerate ZnFs included, as well as the fourth ZnFs of ZBTB12 and OVL2L, which otherwise are closely related to the other member of this family):
YACKI--CCKTFLTLTDCKKHIRV-HTGEKP-----------------------------------YACLK--CGKRFSQSSH---LYKHSKTTC------------------------------------------------------------------------------------------------------	ZBTB5
HKCPF--CPYTAKQKGILKRHIRS-HTGERP-----------------------------------YPCET--CGKRFTRQEH---LRSHALSVH------------------------------------------------------------------------------------------------------	ZBTB8B
IKCTK--CPEVFQGVEKLVFHMRAQHFI--------------------------------------FMCPR--CGKQFNHSSN---LNRHMN-VHRGVKS--------------------------------HSCGI--CGKCFTQKSTLHDHLNL-HSGARP----------YRCSYCDVRFAHKPAIRRHLKEQH	ZBTB12
FLCH---CGKAFSHKSMRDRHVNM-HLNLRP-----------------------------------FDCPV--CNKKFKMKHH---LTEHMK-THTGLKP--------------------------------YECGV--CAKKFMWRDSFMRHRG--H---------------------------------------	ZBTB22
YACSV--CGKRFSLKHQMETHYRV-HTGEKP-----------------------------------FSCSL--CPQRSRDFSA---MTKHLR-THGAAP---------------------------------YRCSL--CGAGCPSLASMQAHMR-GH---------------------------------------	ZBTB32
LICIY--CGKSFNQKGSLDRHMRL-HMGITP-----------------------------------FVCKF--CGKKYTRKDQ---LEYHIR-GHTDDKP--------------------------------FRCEI--CGKCFPFQGTLNQHLRKNH---------------------------------------	ZBTB34
LTCIY--CAKSFNQKGSLDRHMRL-HMGITP-----------------------------------FVCRM--CGKKYTRKDQ---LEYHIR-KHTGNKP--------------------------------FHCHV--CGKSFPFQAILNQHFRKNH---------------------------------------	ZBTB37
YPCQ---CGKSFTHKSQRDRHMSM-HLGLRP-----------------------------------YGCGV--CGKKFKMKHH---LVGHMK-IHTGIKP--------------------------------YECNI--CAKRFMWRDSFHRHVT-SC---------------------------------------	ZBTB43
FKCPY--CSFSAMHQCILKRHMRS-HTGERP-----------------------------------YPCEI--CGKKFTRREH---MKRHTL-VH------------------------------------------------------------------------------------------------------	ZBTB46
YICIV--CKRSYVCLTSLRRHFNI-HSWEKK-----------------------------------YPCRY--CEKVFPLAEY---RTKHEI-HHTGERR--------------------------------YQCLA--CGKSFINYQFMSSHIKSVH---------------------------------------	ZBTB33
YECNE--CGKNFCEKSNLHVHQRT-HTGEKP-----------------------------------YGCNE--CQKAFGDRSA---LKVHQR-IHTGEKPYELHQRTHTGEKP-------------------YACSE--CGKTFYQKSSLTTHQR-TH---------------------------------------	ZNF487
NVCKE--CGNLYCHNMQLTLHKRN-HTQKKC-----------------------------------NQCLD--CGKYFTRQST---LIQHQR-IHTGERP--------------------------------YKCNE--CIKTFNQRAHLT----------------------------------------------	ZNF542
YQCNL--CEKAYTNCFRLRRHKMT-HTGERP-----------------------------------YACHL--CGKAFTQCSH---LRRHEK-THTGERP--------------------------------YKCHQ--CGKAFIQSFNLRRHER-TH---------------------------------------	ZNF705A
FQCAD--CGMVFTWVTHFIEHQKT-HREEGP-----------------------------------FPCPE--CGKVFLHNSV---LTEHGK-IHLLEPPRKKAPRSKGPRESVPPRDGAQGPVAPRSPKRPFQCSV--CGKAFPWMVHLIDHQK-LH---------------------------------------	ZSCAN1
YKCDD--CGKSFTWNSELKRHKRV-HTGERP-----------------------------------YTCGE--CGNCFGRQST---LKLHQR-IHTGEKP--------------------------------YQCGQ--CGKSFRQSSNLHQHHRLHH---------------------------------------	ZNF174
QKCDE--CGKIFSQSSALILHQRI-HSGKKP-----------------------------------YACDE--CAKAFSRSAI---LIQHRR-THTGEKP--------------------------------YKCHD--CGKAFSQSSNLFRHRK-RH---------------------------------------	ZNF396
YTCEQ--CGRGFDWKSVFVIHHRT-HTSGPGVQSPGLATGESTEKPPQGEVAFPHHPRRSLTGPRSYPCEECGCS--FSWKSQ---LVIHRK-SHTGQRR--------------------------------HFCSD--CGRAFDWKSQLVIHRK-GH---------------------------------------	ZNF446
IPCSSPGCCLSFPSVRDLAQHLRT-HCPPTQSLEGKL-----------------------------FRCSALSCTETFPSMQE---LVAHSK-LHYKPNRY-------------------------------FKCEN--CLLRFRTHRSLFKHLH-VCAEH------------------------------------	ZNF414
FACQVAGCCQVFDALDDYEHHYHTLHG---------------------------------------NVCSF--CKRAFPSGHL---LDAHILEWHDSLFQILSERQDM------------------------YQCLVEGCTEKFKTSRDRKDHMVRMH---------------------------------------	ZNF511
YSCPE--CARVFASPLRLQSHRVS-HSDLKP-----------------------------------FTCGA--CGKAFKRSSH---LSRHRA-THRARAGPP------------------------------HTCPL--CPRRFQDAAELAQHVR-LH---------------------------------------	ZNF580
YKCDI--CGKVFNQKRYLAYHHRC-HTGEKP-----------------------------------YKCNQ--CGKTFSYKSS---LVIHKA-IHTGEKP--------------------------------HKCNE--CGKVFNQKAYLASHHR-LH---------------------------------------	ZNF702P
FVCEH--CFGAFRSSYHLKRHILI-HTGEKP-----------------------------------FECDI--CDMRFIQKYH---LERHKR-VHSGEKP--------------------------------YQCER--CHQCFSRTDRLLRHKR-MC---------------------------------------	ZNF740
SLCPFPQCTKSFSNARALEMHLNS-HSGVKMEEFLPPGAS--------------------------LKCTV--CSYTADSVIN---FHQHLF-SHLTQAA--------------------------------FRCNH--CHFGFQTQRELLQHQE-LH---------------------------------------	ZFPM2
FVCKF--CGRHFTKSYNLLIHERT-HTDERP-----------------------------------YTCDI--CHKAFRRQDH---LRDHRY-IHSKEKP--------------------------------FKCQE--CGKGFCQSRTLAVHKT-LH---------------------------------------	OSR1
LGCPL--CPKAFPLQRMLTRHLKC-HSPVRR-----------------------------------HLCRC--CGKGFHDAFD---LKRHMR-THTGIRP--------------------------------FRCSA--CGKAFTQRCSLEAHLAKVHGQPASYAYRERREKLHVCEDCGFTSSRPDTYAQHRA-LH	OVL2L
YNCCWDQCQACFNSSPDLADHIRSIHVDGQRGGV--------------------------------FVCLWKGCKVYNTPSTSQSWLQRHML-THSGDKP--------------------------------FKCVVGGCNASFASQGGLARHVP-TH---------------------------------------	AEBP2
Alignment of the zinc finger motifs of each factor, consecutively numbered and degenerate ZnFs left out:
YACKI--CCKTFLTLTDCKKHIR---VH	ZBTB5(1)
YACLK--CGKRFSQSSHLYKHSK--TTC	ZBTB5(2)
HKCPF--CPYTAKQKGILKRHIR---SH	ZBTB8B(1)
YPCET--CGKRFTRQEHLRSHAL--SVH	ZBTB8B(2)
IKCTK--CPEVFQGVEKLVFHMR--AQH	ZBTB12(1)
FMCPR--CGKQFNHSSNLNRHMN---VH	ZBTB12(2)
HSCGI--CGKCFTQKSTLHDHLN---LH	ZBTB12(3)
YRCSY--CDVRFAHKPAIRRHLK--EQH	ZBTB12(4)
FLCH---CGKAFSHKSMRDRHVN---MH	ZBTB22(1)
FDCPV--CNKKFKMKHHLTEHMK---TH	ZBTB22(2)
YECGV--CAKKFMWRDSFMRHR----GH	ZBTB22(3)
YACSV--CGKRFSLKHQMETHYR---VH	ZBTB32(1)
FSCSL--CPQRSRDFSAMTKHLR---TH	ZBTB32(2)
YRCSL--CGAGCPSLASMQAHMR---GH	ZBTB32(3)
LICIY--CGKSFNQKGSLDRHMR---LH	ZBTB34(1)
FVCKF--CGKKYTRKDQLEYHIR---GH	ZBTB34(2)
FRCEI--CGKCFPFQGTLNQHLR--KNH	ZBTB34(3)
LTCIY--CAKSFNQKGSLDRHMR--LHM	ZBTB37(1)
FVCRM--CGKKYTRKDQLEYHIR---KH	ZBTB37(2)
FHCHV--CGKSFPFQAILNQHFR--KNH	ZBTB37(3)
YPCQ---CGKSFTHKSQRDRHMS---MH	ZBTB43(1)
YGCGV--CGKKFKMKHHLVGHMK---IH	ZBTB43(2)
YECNI--CAKRFMWRDSFHRHVT---SC	ZBTB43(3)
FKCPY--CSFSAMHQCILKRHMR---SH	ZBTB46(1)
YPCEI--CGKKFTRREHMKRHTL---VH	ZBTB46(2)
YICIV--CKRSYVCLTSLRRHFN---IH	ZBTB33(1)
YPCRY--CEKVFPLAEYRTKHEI---HH	ZBTB33(2)
YQCLA--CGKSFINYQFMSSHIK--SVH	ZBTB33(3)
YECNE--CGKNFCEKSNLHVHQR---TH	ZNF487(1)
YGCNE--CQKAFGDRSALKVHQR---IH	ZNF487(2)
YACSE--CGKTFYQKSSLTTHQR---TH	ZNF487(3)
NVCKE--CGNLYCHNMQLTLHKR---NH	ZNF542(1)
NQCLD--CGKYFTRQSTLIQHQR---IH	ZNF542(2)
YQCNL--CEKAYTNCFRLRRHKM---TH	ZNF705A(1)
YACHL--CGKAFTQCSHLRRHEK---TH	ZNF705A(2)
YKCHQ--CGKAFIQSFNLRRHER---TH	ZNF705A(3)
FQCAD--CGMVFTWVTHFIEHQK---TH	ZSCAN1(1)
FPCPE--CGKVFLHNSVLTEHGK---IH	ZSCAN1(2)
FQCSV--CGKAFPWMVHLIDHQK---LH	ZSCAN1(3)
YKCDD--CGKSFTWNSELKRHKR---VH	ZNF174(1)
YTCGE--CGNCFGRQSTLKLHQR---IH	ZNF174(2)
YQCGQ--CGKSFRQSSNLHQHHR--LHH	ZNF174(3)
QKCDE--CGKIFSQSSALILHQR---IH	ZNF396(1)
YACDE--CAKAFSRSAILIQHRR---TH	ZNF396(2)
YKCHD--CGKAFSQSSNLFRHRK---RH	ZNF396(3)
YTCEQ--CGRGFDWKSVFVIHHR---TH	ZNF446(1)
YPCEE--CGCSFSWKSQLVIHRK---SH	ZNF446(2)
HFCSD--CGRAFDWKSQLVIHRK---GH	ZNF446(3)
IPCSSPGCCLSFPSVRDLAQHLR---TH	ZNF414(1)
FRCSALSCTETFPSMQELVAHSK---LH	ZNF414(2)
FKCEN--CLLRFRTHRSLFKHLHVCAEH	ZNF414(3)
FACQVAGCCQVFDALDDYEHHYH--TLH	ZNF511(1)
NVCSF--CKRAFPSGHLLDAHIL--EWH	ZNF511(2)
YQCLVEGCTEKFKTSRDRKDHMV--RMH	ZNF511(3)
YSCPE--CARVFASPLRLQSHRV---SH	ZNF580(1)
FTCGA--CGKAFKRSSHLSRHRA---TH	ZNF580(2)
HTCPL--CPRRFQDAAELAQHVR---LH	ZNF580(3)
YKCDI--CGKVFNQKRYLAYHHR---CH	ZNF702P(1)
YKCNQ--CGKTFSYKSSLVIHKA---IH	ZNF702P(2)
HKCNE--CGKVFNQKAYLASHHR---LH	ZNF702P(3)
FVCEH--CFGAFRSSYHLKRHIL---IH	ZNF740(1)
FECDI--CDMRFIQKYHLERHKR---VH	ZNF740(2)
YQCER--CHQCFSRTDRLLRHKR---MC	ZNF740(3)
SLCPFPQCTKSFSNARALEMHLN---SH	ZFPM2(1)
LKCTV--CSYTADSVINFHQHLF---SH	ZFPM2(2)
FRCNH--CHFGFQTQRELLQHQE---LH	ZFPM2(3)
FVCKF--CGRHFTKSYNLLIHER---TH	OSR1(1)
YTCDI--CHKAFRRQDHLRDHRY---IH	OSR1(2)
FKCQE--CGKGFCQSRTLAVHKT---LH	OSR1(3)
LGCPL--CPKAFPLQRMLTRHLK---CH	OVL2L(1)
HLCRC--CGKGFHDAFDLKRHMR---TH	OVL2L(2)
FRCSA--CGKAFTQRCSLEAHLA--KVH	OVL2L(3)
HVCED--CGFTSSRPDTYAQHRA---LH	OVL2L(4)
YNCCWDQCQACFNSSPDLADHIR--SIH	AEBP2(1)
FKCVVGGCNASFASQGGLARHVP---TH	AEBP2(3)
Aligned BED zinc finger sequences (Family 2.3.5):
RAKSKVWKYFGFDTNAEGCILQWKKIYCRICMAQIAYSGN-----TSNLSYHLEKNHPEEFCEF	ZBED1
TRFSEAWEYFHLAPARAGHHPNQY-ATCRLCGRQVSRGPGVNVG-TTALWKHLKSMHREELEKS	ZBED2
APYSEAWGYFHLAPGRPGHPSGHW-ATCRLCGEQVGRGPGFHAG-TSALWRHLRSAHRRELESS	ZBED3
RKKSPAWKHFFISPRDST------KAICMYCVKEFSRGKNEKDLSTSCLMRHVRRAHPTVLIQE	ZBED4(1)
RRRSAVWKHFYLSPLDNS------KAVCIHCMNEFSRGKNGKDLGTSCLIRHMWRAHRAIVLQE	ZBED4(2)
RLKSEVWHHFSLAPMDSL------KAECRYCGCAISRGKKGDVG-TSCLMRHLYRRHPEVVGSQ	ZBED4(3)
KKTSKLWNHFSICSADST------KVVCLHCGRTISRGKKPTNLGTSCLLRHLQRFHSNVLKTE	ZBED4(4)
RKYDESYLSFGFTYFGNRDAP---HAQCVLCKKILSNSSLA----PSKLRRHLETKHAAYKDKD	ZBED5
AKTSIVWHFFHVDPQYTW------RAICNLCEKSVSRGKPGSHLGTSTLQRHLQARHSPHWTRA	ZBED6(1)
AKTSAVWNFFYTDPQHIS------RAVCNICKRSVSRGRPGSHLGTSTLQRHLQATHPIHWAVA	ZBED6(2)